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BIOC2120 self assessment tests: Dr. J.A. Illingworth

Integration & Compartmentation of Metabolism

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Here are some optional self-assessment tests. You can try them as often as you like. These web pages are not intended to be secure and your performance is not being recorded. The questions are all extended matching type, where each of the twelve options may be used once, more than once, or not at all. The distractors (incorrect options) have been chosen to guide you through the material, so you should know what they all mean, and know why they are wrong. Try to work out your own mistakes, rather than swiftly consulting the crib. You can select your own level of feedback, from a raw mark, or a list of errors, or a full explanation of exactly where you went wrong.




Question 1: The expression of some mammalian genes alters markedly in response to environmental changes. Identify those genes in the following list which best match the descriptions given below:

  • NAD-linked isocitrate dehydrogenase

  • oxoglutarate dehydrogenase

  • ATP:citrate lyase

  • pyruvate carboxylase

  • phosphoenolpyruvate carboxykinase

  • uncoupling protein 1

  • carnitine palmitoyltransferase 2

  • pyruvate dehydrogenase

  • glucokinase

  • glutamate:oxaloacetic transaminase

  • argininosuccinate synthetase

  • malate dehydrogenase

Gene descriptionIdentification

1. A gene expressed in adipocytes where transcription increases markedly on refeeding a high carbohydrate diet after prolonged fasting.

2. A gene that is activated by cold exposure whose expression requires thyroxin and 3'5' cyclic AMP.

3. A gene expressed in liver tissue in response to insulin whose protein product has a significantly low affinity for its substrate.

4. A gene whose transcription increases during fasting in response to 3'5' cyclic AMP.

5. A gene expressed principally in liver tissue whose activity increases on feeding a high-protein diet.


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Question 2: The activity of some mammalian enzymes is regulated by phosphorylation and dephosphorylation. Identify those enzymes in the following list which best match the descriptions given below:

  • glutamate dehydrogenase

  • phosphofructokinase 2

  • HMG-CoA reductase

  • citrate synthase

  • glycogen phosphorylase

  • triglyceride lipase

  • pyruvate dehydrogenase

  • acetyl CoA carboxylase 2

  • hexokinase

  • pyruvate kinase

  • glycerol kinase

  • HMG-CoA lyase

Enzyme descriptionIdentification

1. An enzyme that is activated by a protein kinase cascade and is also directly activated by 5'AMP.

2. A mitochondrial enzyme that is inactivated by a protein kinase.

3. An enzyme present in adipocytes that is activated by protein kinase A.

4. An enzyme whose inactivation by 5'AMP-dependent protein kinase (AMPK) promotes fatty acid oxidation.

5. A bi-functional enzyme present in liver whose activity is switched from kinase to phosphatase after phosphorylation by protein kinase A.


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Question 3: Some metabolic processes are associated with particular tissues or subcellular compartments. Identify the locations in the following list which best match the metabolic processes given below:

  • adipocyte cytosol

  • adipocyte mitochondria

  • brain neurones

  • cardiac cytosol

  • cardiac mitochondrial matrix space

  • enterocytes

  • kidney mitochondria

  • liver cytosol

  • liver mitochondrial matrix space

  • liver smooth endoplasmic reticulum

  • mitochondrial intermembrane space

  • skeletal muscle

Metabolic processTissue or compartment

1. Cholesterol biosynthesis.

2. Acetoacetate biosynthesis.

3. Chylomicron biosynthesis.

4. Urea formation.

5. Myokinase reaction.


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Question 4: Certain enzyme reactions are particularly associated with the switch between fed and fasted states. Identify those enzymes from the following list which best match the descriptions given below:

  • acetyl-CoA carboxylase

  • fructose-1,6-bisphosphatase

  • glucokinase

  • glucose-6-phosphatase

  • glycogen synthetase

  • hydroxymethylglutaryl-CoA synthase

  • "malic" enzyme

  • ornithine transcarbamylase

  • phosphoenolpyruvate carboxykinase

  • pyruvate carboxylase

  • pyruvate kinase

  • pyruvate dehydrogenase

Enzyme descriptionIdentification

1. An enzyme present in human liver, both mitochondria and cytosol, where expression the cytosolic version is controlled by a cyclic AMP response element binding protein [CREB].

2. An ATP-dependent enzyme present in human liver cytosol that is strongly activated by citrate ions.

3. A cytosolic enzyme where the liver isoenzyme, but not the muscle version, is inactivated by protein kinase A.

4. An enzyme induced by 3'5' cyclic AMP that is located in the smooth endoplasmic reticulum in liver.

5. A cytosolic enzyme that supplies about half of the NADPH required for lipogenesis.


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Question 5: Identify those hormones / cytokines from the following list which best match the descriptions given below:

  • adrenalin

  • amylin

  • cholecystokinin

  • cortisol

  • glucagon

  • glucagon-like insulinotropic peptide (GIP)

  • growth hormone

  • insulin

  • leptin

  • somatostatin

  • thyroxin

  • TNF-α

Hormone descriptionIdentification

1. A hormone that acts slowly to raise blood glucose concentrations and also has a powerful immunosuppressive effect.

2. A hormone that slowly increases alertness and basal metabolic rate.

3. A hormone produced by the duodenum which increases pancreatic enzyme output and signals satiation.

4. A hormone secreted by modified nerve terminals in response to low blood glucose concentrations.

5. A hormone produced in the pancreas that stimulates hepatic glycogenolysis.


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Question 6: Some diseases are strongly associated with obesity. Identify those conditions in the following list which best match the descriptions given below:

  • atherosclerosis

  • Crohn's disease

  • cholelithiasis

  • Graves disease

  • homocysteinemia

  • hypertension

  • ketoacidosis

  • lung cancer

  • osteoarthritis

  • peptic ulcers

  • type 2 diabetes

  • acromegaly

Disease descriptionIdentification

1. A condition associated with obesity that is often treated by salt-restriction, diuretics, and / or beta blockers, calcium antagonists and angiotensin converting enzyme (ACE) inhibitors.

2. An independent risk factor for cardiovascular diseases that shows little correlation with obesity.

3. Mechanical loads associated with obesity may cause this condition in weight-bearing joints.

4. A problem caused by solid semi-crystaline objects that is associated with obesity (or rapid weight loss) especially in women.

5. Condition characterised by abnormal deposits containing cholesterol, smooth muscle cells and macrophages that is associated with obesity.


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Question 7: The following list includes various parts of the gastrointestinal tract. Identify the components which best match the descriptions given below:

  • colon

  • duodenum

  • exocrine pancreas

  • gall bladder

  • gastric glands

  • ileum

  • incretin

  • liver

  • portal vein

  • pylorus

  • salivary glands

  • villus

DescriptionIdentification

1. A signal that reduces gastric motility and increases insulin output from the pancreatic islets.

2. Most of the digestive enzymes are synthesised here.

3. An important glucose monitoring centre is located here.

4. Physically controls the output of chyme from the stomach.

5. This part of the gut is specialised for salt and water resorption rather than nutrients.


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Question 8: A variety of neural structures are known to be involved in appetite regulation. Identify those items in the following list which best match the descriptions given below:

  • anterior pituitary*

  • arcuate nucleus

  • forebrain

  • glossopharyngeal nerve

  • hypothalamus

  • medulla oblongata

  • NPY / AGRP neurones

  • optic chiasma

  • POMC / CART neurones

  • solitary tract

  • sympathetic ganglia

  • vagus nerve

[* strictly speaking, the anterior pituitary gland isn't real neural tissue, since it is derived in the embryo from the back of the throat.]

DescriptionIdentification

1. A major orexigenic signalling pathway in the hypothalamus.

2. Most of the leptin receptors are located here.

3. Carries most of the signals to and from the tongue and salivary glands.

4. A major anorexigenic pathway in the hypothalamus.

5. Integrates many of the nervous signals coming from the GI tract, and issues simple instructions to the digestive system.


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Question 9: A variety of hormones and peptide messengers either affect or are secreted by the pituitary gland. Identify those items in the following list which best match the descriptions given below:

  • corticotropin

  • dopamine

  • ghrelin

  • leutenising hormone

  • melanocyte stimulating hormone

  • neuropeptide Y

  • oxytocin

  • prolactin

  • somatostatin

  • somatotropin

  • thyrotropin

  • vasopressin

DescriptionIdentification

1. The hormone that stimulates steroid production in the adrenal glands.

2. The hormone that stimulates the production of thyroxin.

3. The hormone that indirectly favours the retention of protein stores, blocks carbohydrate utilisation in many tissues and increases the mobilisation of fat.

4. A peptide that is produced both in the brain and in the pancreatic islets, which inhibits the production of several pituitary and pancreatic hormones.

5. A wake-up call from an empty stomach!


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Question 10: A variety of proteins are involved in fat breakdown and the minimisation or safe disposal of reactive oxygen species produced during fat oxidation. Identify those items in the following list which best match the descriptions given below:

  • acetyl CoA carboxylase

  • 5'AMP-dependent protein kinase (AMPK)

  • carnitine acyl transferase

  • glutathione peroxidase

  • lipoprotein lipase

  • mobilising lipase

  • pancreatic lipase

  • PPAR-α

  • superoxide dismutase

  • thermogenin (UCP1)

  • uncoupling protein 2

  • uncoupling protein 3

Protein descriptionIdentification

1. The protein that catalyses the proton leak in brown adipose tissue mitochondria.

2. The enzyme initially responsible for the breakdown of stored fats.

3. The enzyme that is inhibited by the anti-obesity drug orlistat.

4. The enzyme that degrades chylomicrons and very low density lipoproteins in the bloodstream.

5. A protein that helps to minimise the production of reactive oxygen species during episodes of rapid fat oxidation.


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Question 11: Which of the following observations are expected in patients suffering from the metabolic syndrome?

  • C-reactive protein

  • immunoglobulins

  • plasma triglycerides

  • serum bilirubin

  • atherosclerosis

  • HDL cholesterol

  • cholelithiasis

  • steatorrhea

  • serum albumin

  • LDL cholesterol

  • plasma insulin

  • free fatty acids

ObservationsIdentification

1. Reduced concentration of a blood component.

2. A common side-effect of drug therapy.

3. Increased output of a liver protein.

4. A major contributor to changes in blood pressure.

5. An important signal that is largely ignored.


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